rs33502584 SNP Detail

Summary

• ID
  rs33502584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25403409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA CCCGTAAGTC GTCCAGATAG
  Y
  GATCAGGGCG AGGCCGGAGA CGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39543942	mCV22798307	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145380210	ENSMUSSNP2432776	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss325336546	CHEV_17_25321380	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33502584					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25403409 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	within coordinates
Cpgi8755	CpG island 8755	within coordinates
Rr370183	regulatory region 370183	within coordinates
Rr523507	regulatory region 523507	911 bp distal
Rr523508	regulatory region 523508	1007 bp distal
Rr523509	regulatory region 523509	within coordinates
Tssr5037	transcription start site region 5037	123 bp upstream
Tssr143142	transcription start site region 143142	129 bp upstream
Tssr143143	transcription start site region 143143	175 bp upstream
Tssr146818	transcription start site region 146818	33 bp upstream
Tssr146819	transcription start site region 146819	within coordinates
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	126 bp upstream