rs33503180 SNP Detail

Summary

• ID
  rs33503180
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29265647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACGCACAGCA CTGCCCCACC AAAGTTCCAG GGTCAAGGTG GAGCCTGCAC AGGGTTGAGC
  ACAGCATTGC CAGGCCTGGC CCTTGTTGGC AGTAGACTCC CTCCAACACG TGTTGGCTCT
  GAGGCATAGT AGAGCAGGTG GGCTGCCCAC CCCAAGGATT TTACAAGCAC CGTCTGCATC
  CATTTTAGTG ACAGGGTTTC TCTGTAGCCC TGCGTGTCCT GGTATTCAAA AAGAGATCTA
  CCTGTTTCTG ATTCCTGGGT GCCAGGGACC AAAGGCACCA CCACCATCCA GTCTTTTATT
  W
  AAAAAAAAAA AAAACATATT TGAGAAAGTT TTTTTTTTTT AAGATTTAGT TATTTTTATT
  ATATGTAAGT ACACTGTAGC TGCCTTCAAA CACTCCAGAA GTCAGATCTC ATTACGGATG
  GTTGTGAGCC ACCATGTGGT TGCTGGGATT TGAACTTCGG ACCTTTGGAA GAGCAGTCGG
  GTGCTCTTAC CAACTGAGCC ATCTCACCAG CCGGAAAAAA GTATTAGTTT GTACAGGTGT
  TTTGCCTGTG TGTGTCTGTG TGCTGGTGCC TACAGAAGCC AGAAGAGGAT GTTGGATCCC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39543680	mCV27559858	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss145426145	ENSMUSSNP4730053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33503180					SNP	?	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29265647 () rs orientation: forward

Symbol	Name	Function Class
Rr524769	regulatory region 524769	13 bp distal
Rr524770	regulatory region 524770	1582 bp distal
Rr524771	regulatory region 524771	186 bp proximal
Rr524772	regulatory region 524772	405 bp proximal
Rr524773	regulatory region 524773	1049 bp proximal
Rr524774	regulatory region 524774	1503 bp proximal
Rr524775	regulatory region 524775	1926 bp proximal
Tssr143492	transcription start site region 143492	542 bp upstream