rs33505366 SNP Detail

Summary

• ID
  rs33505366
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44236658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCTATT TAAAAAATTT
  AAACTAGTCT TTATTTTCTA CTTTCTTGGA GCATTTATTT CATGGTATGG GTAGAATTTA
  TACAATTTAT AGTTAAAAAT GACTGTTATC AAATAGTGTA TTCATCTAAT ATGTCAGTAT
  AAGTATCAAA TTATAATGTT GGATATTTAC TTCTTGGAAT GAATTTACAT AAAATTTTTA
  Y
  AAGTTATCTC ACTTATCTAA GTCACAGCTC TTATTTATTT TCATTGGTTT ATTTGGAAAG
  ACAGGTTCTT TTTGCAGGTC ACTGAGGCCT CATCATGGCA AGTGTATGCA ATTTCAACTC
  AGCTTACTTT CAGAGTTATC ATTGGGGGAA TAGGATCTAA ATTTTTGTTT TCAAGTAGTC
  AGTAGAAGAA AAAAAAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47306390	NES11069856	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33505366					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47306390	NES11069856	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44236658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi227	CpG island 227	1148 bp proximal
Rr410478	regulatory region 410478	733 bp proximal