rs33505555 SNP Detail

Summary

• ID
  rs33505555
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:85563661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG GCTCAAACAG AGAAGAATGG
  Y
  CTGAAAACTC AGAGGTCCAG GAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46283763	mCV23007683	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145395103	ENSMUSSNP5068925	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss322752015	CHEV_8_87360931	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33505555					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85563661 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gadd45gip1	growth arrest and DNA-damage-inducible, gamma interacting protein 1			1550 bp downstream
Gm64216	predicted gene, 64216			951 bp upstream
Rad23a	RAD23 homolog A, nucleotide excision repair protein			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr666631	regulatory region 666631			461 bp proximal
Tssr82170	transcription start site region 82170			1685 bp upstream
Tssr82171	transcription start site region 82171			1483 bp upstream
Tssr82172	transcription start site region 82172			1532 bp downstream
Tssr82173	transcription start site region 82173			1567 bp downstream
Tssr82174	transcription start site region 82174			1594 bp downstream