rs33505730 SNP Detail

Summary

• ID
  rs33505730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103211368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTATATT TGATGACAAA
  TTCACTTACT GGTTTTTGAT TACATAAGAT TTAAAAATTT TAATTTGAAG ACTTACAGGT
  CTTTAAGAAT ATATGAAAAT AAGATATCAG TAATTATTGA CTGTAATATC TATACTTAAT
  AAGTATCTAG ATATATTTCA CTGTTTGATA CCAGAATTGT GTTTAATATG ATTGTGTTTG
  Y
  ACCCATATAG CCACATAAAT ATAAATTCAA TATTTTTATG CACAGTGCTA ACACTGACTT
  GTGGAAGTTT TCTGGATATT TATGAACATA ATATAAACAT GTTGCTATAT GGTATTCTTT
  TAGAGGTTGA GCCAGTTCAT AAGCTATTTT TGTATAATGT ATACCTAATT TTTTTCTTTA
  TTAAAATTTA TCTTATTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46821782	NES10703001	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C		C	T	T	C		C
ss320856880	CHEV_3_103107975	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33505730					SNP	C	C	C	T	C	C	C	C	C	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46821782	NES10703001	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103211368 () rs orientation: forward

Symbol	Name	Function Class
Rr69849	regulatory region 69849	568 bp distal
Rr69850	regulatory region 69850	1633 bp proximal
Trim33	tripartite motif-containing 33	within coordinates