rs33505971 SNP Detail

Summary

• ID
  rs33505971
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71149586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCCCAAGGT CAGGGCGGAG CCTCGCGCGC TCCGCCAAGC TCCGTACGGC CCCGGGGAGA
  GGCAGGCCTG GCGCCGGGGG CTGGCTGGCG TTGGGCCAGC ACTAGCTGGC TCAGTCGTTT
  GGCGGGGGGC GGGGGAGGGG GTGCTGGCTG GGATATGGCT CGCGAAGCGC AAACCCCACG
  TGTGTGGTGA GGGGAGAGTC CACTCTATCT TTCTGGATGG TCACTTGCCT ACAAAAGGGG
  ATAAAACCTG GGTGTGTGGC TCTCTGAGGC AACAACTGGT CAAGGCTCGG GCGGGGGTTT
  K
  GGGGGAGGGG GGAGAACCCT CTGAGGCCTC AATGGCCTGG GCGAAGGTCC TGAGGTGCAA
  AGGAGCTCCA ATGGGGTACA GATTGGAGAG GAGTCACAGA GAAGGGATGA GACTCCTCTC
  TGGTCTTCTA AGGGTTGTGT TGAGTGTGCT GGGACTTGTT GCTCCCACCT CTTCCACCTC
  CGTTCCCAGC AAGCAGAAAA GCCTGCATCA GGCCTGGTGG CATACTGTAC TAATTAAGAG
  GGTAATTACC AGTCCGGATT CTCATTTGCA GGCTCCACTC TGGGACCCAC CTCAGGCTCT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46284330	mCV22788469	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33505971					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71149586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	1256 bp distal
Cpgi20486	CpG island 20486	within coordinates
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	1557 bp upstream
Rr368548	regulatory region 368548	1207 bp downstream
Rr368549	regulatory region 368549	1360 bp upstream
Rr368550	regulatory region 368550	1723 bp upstream
Rr400910	regulatory region 400910	1356 bp downstream
Rr664888	regulatory region 664888	within coordinates
Rr664889	regulatory region 664889	1067 bp proximal
Rr664890	regulatory region 664890	1568 bp proximal
Rr664891	regulatory region 664891	1722 bp proximal
Rr664892	regulatory region 664892	1867 bp proximal
Tssr77799	transcription start site region 77799	1590 bp upstream
Tssr77800	transcription start site region 77800	1995 bp upstream
Tssr81647	transcription start site region 81647	1381 bp downstream
Tssr81648	transcription start site region 81648	1398 bp downstream