rs33507244 SNP Detail

Summary

• ID
  rs33507244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148892981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTCGTC TTCACGGGCG
  GCTGGGTTGC CCATCTGCTT TTCCCACCAT GGATGGAACG GACACAAATG TCTCACCCAC
  AGTCAACAAA ACCAACAAGA TATCCTCGAA CATCACAGTA CACGTCTTCT TTGGCTTGGC
  TGGTTGGTTG TCCTTTTTCG TTTTGGGTTC GGGAGGGTTT TTTTTTTTTT TGTTTGTTTG
  Y
  TTGTCTTTCA GGCAAGGTCT CCCACGTGTA GCCCAGGCTG GCCTTGTACT TCCGCTCCTC
  TTGTCTCAGC TTCCCCAGGG CTGGGATCAT AGGGCATGTG TCGCCATGTC CAATCTGAAC
  TTCCTTTATT TGCAAATCAT GCGCAAAGAG AAACAGAGCA GACTCGGCAG CAGCAGCAGG
  GGTAATGTTT AACAGTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45787685	mCV22844426	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33507244					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148892981 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	within coordinates
Rr378799	regulatory region 378799	592 bp upstream
Rr625340	regulatory region 625340	1543 bp distal
Rr625341	regulatory region 625341	1438 bp distal
Rr625342	regulatory region 625342	within coordinates
Rr625343	regulatory region 625343	634 bp proximal
Tssr54595	transcription start site region 54595	409 bp upstream