rs33507481 SNP Detail

Summary

• ID
  rs33507481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115117240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAAGGCA GTCAGTGCTT ACCCACCGAG CCATCTCACC
  AGCCCTGAAA AACATTTCCT ATTAATTGTA TATTGTGGGG TGAACGTGTG GAGGGCAAAG
  R
  ACAACTTGCG AAATCCAGCT ATCTCCTTCC ACCACCTTCT TTCTCAGATT TTTCTCGAAG
  GTGTGTATTC AATCCAATGA GACGTGAACG CAGGGAGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45787069	mCV24915492	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	A
ss149119830	ENSMUSSNP1862257	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss321653998	CHEV_5_115429190	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33507481					SNP	A	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115117240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16346	CpG island 16346	69 bp proximal
Gm71622	predicted gene, 71622	within coordinates
Gm71625	predicted gene, 71625	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	within coordinates
Rr618085	regulatory region 618085	within coordinates
Rr618086	regulatory region 618086	153 bp distal
Rr618087	regulatory region 618087	208 bp proximal
Rr618088	regulatory region 618088	1237 bp proximal