rs33507764 SNP Detail

Summary

• ID
  rs33507764
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:125121322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGGCATGG CACCTGTCAT TCCACCCCGC TGGAGAGTCT
  GAGCAGGAAG ATTCCTCAAG TTCAAGGCCA ATCTGGGCTA CATAGTGAAT CCCACTTAGG
  W
  AACATCTAAA ATAAAACAAG GCTTCCCCAC TAACCCTACA GTGAGCTGAA CCATTCTCAG
  AAGAAATGAA GAACACAGAG AAACCAGCTT GTGAGTGTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45787624	mCV25274509	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss149206879	ENSMUSSNP4948185	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321674178	CHEV_5_125524628	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33507764					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:125121322 () rs orientation: forward

Symbol	Name	Function Class
Ncor2	nuclear receptor co-repressor 2	within coordinates
Rr109368	regulatory region 109368	1079 bp proximal
Rr126915	regulatory region 126915	within coordinates
Tssr53394	transcription start site region 53394	1440 bp upstream
Tssr53395	transcription start site region 53395	1432 bp upstream
Tssr53396	transcription start site region 53396	1208 bp upstream