rs33508190 SNP Detail

Summary

• ID
  rs33508190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:122207577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCAGGGA TGGTGCTGTA
  GTGCACTGCA ACACTGCTTC ACTAGAGGCA GACCTAGGGC AAGGCACACA CAGCTTCTCC
  TGGTTCACTG GTAGTGGAGC TGCAGCAGCA GTCTGCCAAC ACAGGGTAGA GTCACTGCCA
  GGAGTAGAGC GGCTGTAGAC TGGGGCCTAA GAGCCTGCAG TTCTGTGAGT GGCTGGCTGG
  Y
  CACTTAGACC TGTGTTCATC AACTTGTTCA GCAGCTTCTA GAGCTTCTGC AGAGCATCCA
  TTATTTCTGC TTTAGTTTCT ATTTCAAATT AGAAGAAAAC TTTGATTTAG TTACATTATA
  CTATAGCCCT GTTTACCTAA CAGCAGTAAT ATGTGGCTCC TCCCATACAT TATCTAGTAA
  ATAGTTTAAA AGTTTAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47807231	NES11989740	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33508190					SNP	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47807231	NES11989740	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122207577 () rs orientation: forward

Symbol	Name	Function Class
Abhd5	abhydrolase domain containing 5	within coordinates
Rr193610	regulatory region 193610	within coordinates
Rr203025	regulatory region 203025	166 bp distal
Rr203026	regulatory region 203026	469 bp proximal