rs33509116 SNP Detail

Summary

• ID
  rs33509116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:122208300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCAGGGA CGTGTGTTTG
  ATTATTCCCT CGAGGTTTCC AGTCTGGGCT CCACTCACAA CCCCATTCAG AGACCTGACG
  TCACAGGGCT TTGGGCGAGG TTTGTGCCAT ACACACTTTG GTGTCCCAGT AGTGAGTCAC
  CTTTCTGAGG TCTTCCCAGT CTCTCTGGAG ACACTGAGAG ACTGGCTCAG AATCAGATAA
  R
  CTCACACCCA CTTCCCAGTG CAGTACACAC AGTTGTGGTT TTTCCTGGGC CCTGCATTAG
  TCCTTTAGTT TAGAGTGTCA TTTCTGCTGG CCCTTGCATG GTGGAATTGA CTAAGATCCA
  GGAAGTTTTC CTGTTTATCC CAGAGCCTTC TGATAGAAAG CCTAAGTCAT TTTCAGAGGA
  GTCTCCACTG TTCTTTTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47807237	NES11989744	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33509116					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47807237	NES11989744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122208300 () rs orientation: forward

Symbol	Name	Function Class
Abhd5	abhydrolase domain containing 5	within coordinates
Rr193610	regulatory region 193610	700 bp distal
Rr203025	regulatory region 203025	889 bp distal
Rr203026	regulatory region 203026	within coordinates