rs33510081 SNP Detail

Summary

• ID
  rs33510081
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:69542679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGGCAGCT TGGCTCTGTG GGTGGCTCAT
  TGGTTAAAAG CGTTTCAGCT GAAGGGTTTT AGCTAGGCGC CCTCCAGCCT GACTAATCCT
  GTCCTGAGCT GTCAGTGGGT CATGTGATAA CACTGCAGCG AGGGGAAGGG AAAAAAAAAA
  M
  ACACACACAC ACACATTGGA GAGTGGATTG CTGAGGTGTG CCTTTTAAGC ATTTTTTTAG
  AATAATTGTT AAAATTAGAG AATGCCTGTT AGGGGTTCAT GTGAGCCCAA GGAAACGTCG
  GGAAAACTGA CAGATTTATA CCTGAGAATT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46284911	mCV22776469	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss322693718	CHEV_8_71613926	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33510081					SNP	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69542679 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	within coordinates
Cpgi20406	CpG island 20406	613 bp distal
Rr400869	regulatory region 400869	1240 bp downstream
Rr664484	regulatory region 664484	1371 bp distal
Rr664485	regulatory region 664485	315 bp distal
Rr664486	regulatory region 664486	824 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	792 bp upstream
Tssr77656	transcription start site region 77656	1300 bp downstream
Tssr77657	transcription start site region 77657	1283 bp downstream
Tssr77658	transcription start site region 77658	1231 bp downstream
Tssr81518	transcription start site region 81518	812 bp upstream