rs33510227 SNP Detail

Summary

• ID
  rs33510227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71048288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC CTTTGGCAAT AATTCCTATA
  Y
  CCCGGGGCCC AAGCCTCCGG ACAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46284812	mCV22785042	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss145127724	ENSMUSSNP1510415	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss322700559	CHEV_8_73119537	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33510227					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71048288 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20472	CpG island 20472	94 bp distal
Cpgi20473	CpG island 20473	1909 bp proximal
Isyna1	myo-inositol 1-phosphate synthase A1	within coordinates
Rr177468	regulatory region 177468	513 bp proximal
Rr177469	regulatory region 177469	1113 bp proximal
Rr186759	regulatory region 186759	within coordinates
Rr186760	regulatory region 186760	1512 bp proximal
Rr400903	regulatory region 400903	1089 bp downstream
Ssbp4	single stranded DNA binding protein 4	1847 bp downstream
Tssr77768	transcription start site region 77768	1428 bp downstream
Tssr77769	transcription start site region 77769	1266 bp downstream
Tssr77770	transcription start site region 77770	1242 bp downstream
Tssr77771	transcription start site region 77771	1226 bp downstream
Tssr77772	transcription start site region 77772	1198 bp downstream
Tssr77773	transcription start site region 77773	1126 bp downstream
Tssr77774	transcription start site region 77774	989 bp downstream
Tssr77775	transcription start site region 77775	565 bp downstream
Tssr77776	transcription start site region 77776	1187 bp upstream