rs33510797 SNP Detail

Summary

• ID
  rs33510797
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71149765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTG TTGCTCCCAC CTCTTCCACC
  K
  CCGTTCCCAG CAAGCAGAAA AGCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46285288	mCV22788471	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G
ss145129764	ENSMUSSNP1813420	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss322701104	CHEV_8_73221014	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33510797					SNP	G	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71149765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	1435 bp distal
Cpgi20486	CpG island 20486	104 bp distal
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	1378 bp upstream
Jund	jun D proto-oncogene	1834 bp upstream
Rr368548	regulatory region 368548	1386 bp downstream
Rr368549	regulatory region 368549	1181 bp upstream
Rr368550	regulatory region 368550	1544 bp upstream
Rr400910	regulatory region 400910	1535 bp downstream
Rr664888	regulatory region 664888	113 bp distal
Rr664889	regulatory region 664889	888 bp proximal
Rr664890	regulatory region 664890	1389 bp proximal
Rr664891	regulatory region 664891	1543 bp proximal
Rr664892	regulatory region 664892	1688 bp proximal
Tssr77799	transcription start site region 77799	1411 bp upstream
Tssr77800	transcription start site region 77800	1816 bp upstream
Tssr81647	transcription start site region 81647	1202 bp downstream
Tssr81648	transcription start site region 81648	1219 bp downstream