rs33511628 SNP Detail

Summary

• ID
  rs33511628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23862892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCGAGCCA TGCTGGGCAG TGGTGGCGCA CGCCTTTAAT
  CCCAGCACTC GGGAGGCAGA GGCAGGCGGA TTTCTGAGTT CGAGGCCAGT CTGGTCTACA
  R
  AGTGAGTCCA GGATAGCCAG GGCTATACAG AGAAACCCTG TCTCGGGAAA AAAAAAAAAA
  AAAAAGACTC TGGGCCAATC ATAGAGGCAG GCTTGTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39544956	mCV23796218	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145329899	ENSMUSSNP6001371	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33511628					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23862892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8679	CpG island 8679	630 bp proximal
Gm7773	predicted gene 7773	774 bp downstream
Mmp25	matrix metallopeptidase 25	within coordinates
Rr339268	regulatory region 339268	508 bp proximal
Tssr142937	transcription start site region 142937	1705 bp downstream
Tssr146620	transcription start site region 146620	1035 bp downstream
Tssr146621	transcription start site region 146621	1061 bp downstream
Tssr146622	transcription start site region 146622	1081 bp downstream
Tssr146623	transcription start site region 146623	1129 bp downstream
Tssr146624	transcription start site region 146624	1148 bp downstream
Tssr146625	transcription start site region 146625	1314 bp downstream
Tssr146626	transcription start site region 146626	1346 bp downstream