rs33512143 SNP Detail

Summary

• ID
  rs33512143
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132355843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTGCACAAT TTATGTGTTC TTTCAGGTAC AGAAAACAAT GTTTGATACC TCGATTTTAG
  GTATCATGAG AGCCTGGGCT ATAGCTCTTC TCCCTTCCTC CAGATCCCTT CATGCTAAAA
  ACAGATTTAA ACAAAACCCC GCTAAGAGCT AAGACAGCGA GAATGAGCCC CGGGGACTGT
  ACAGAGAGAA GCCCAGAAGG AGAAACTATG CCAAGCAAGG CCTGCTGGGA AGCCACCAGA
  AAAGCCTCCC CTGGAGAGGG ACAACATGAC CCAGATTGCT GGAAAAAAAA ACAAAAACAA
  M
  AAAAAAAAAC AAAAAATAAA AAAACCCTAC AGTCCAACCA TCCTGAGATC TGTGTCCTCA
  CAGAACGGAA GGAAGACAGC AGGGTACTTT GGCAAGGAGT TGGTAGAGCC GGCGACATGG
  CAGGTGTGAG GGGGTGGAGG ACAGATCTCT GAGAGAACTT GGTCTTCTGA GAGCCTCTGG
  TGCAGATGGA TGAGGAGGTG TGGCTGCTTC TTCCCCGCCC CCATGCCCTC CCCCTCAGGA
  GCAGGAGAGG TAAACCATGA GGATTGATGC ATGTTGCCAC CAGACCAACT TAAAGGGCTG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45287811	mCV22302768	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33512143					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132355843 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Gm74612	predicted gene, 74612	1419 bp upstream
Rr367319	regulatory region 367319	1038 bp downstream
Rr367320	regulatory region 367320	81 bp upstream
Rr565480	regulatory region 565480	1430 bp distal
Rr565481	regulatory region 565481	932 bp distal
Rr565482	regulatory region 565482	within coordinates
Tssr26474	transcription start site region 26474	1414 bp upstream
Tssr26475	transcription start site region 26475	4 bp upstream