rs33513805 SNP Detail

Summary

• ID
  rs33513805
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC CAGATGTTGT TATGTTTATT
  W
  TGATATTTAA AGATATGCAT TCGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45788488	mCV23643701	ABI	CRAMUS_MOUSE	f	SNP	A	T			T		A
ss61198250	NES16702742	PERLEGEN	MM_PANEL2	f	SNP		T	A	A		A		A		A	T	A		A
ss148818305	ENSMUSSNP2674455	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T					A
ss321608515	CHEV_5_91334417	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33513805					SNP	A	T	A	A	T	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198250	NES16702742	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053250 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Rr614422	regulatory region 614422	1508 bp distal
Tssr47224	transcription start site region 47224	1682 bp downstream
Tssr47225	transcription start site region 47225	1580 bp downstream
Tssr47226	transcription start site region 47226	1511 bp downstream
Tssr47227	transcription start site region 47227	1317 bp downstream
Tssr47228	transcription start site region 47228	1254 bp downstream
Tssr47229	transcription start site region 47229	1233 bp downstream
Tssr47230	transcription start site region 47230	1208 bp downstream
Tssr47231	transcription start site region 47231	1178 bp downstream
Tssr47232	transcription start site region 47232	1031 bp downstream
Tssr47233	transcription start site region 47233	981 bp downstream
Tssr47234	transcription start site region 47234	946 bp downstream
Tssr47235	transcription start site region 47235	188 bp downstream
Tssr47236	transcription start site region 47236	149 bp downstream
Tssr47237	transcription start site region 47237	129 bp downstream
Tssr47238	transcription start site region 47238	70 bp downstream
Tssr47239	transcription start site region 47239	65 bp downstream
Tssr47240	transcription start site region 47240	46 bp downstream
Tssr47241	transcription start site region 47241	17 bp downstream
Tssr47242	transcription start site region 47242	within coordinates
Tssr47243	transcription start site region 47243	19 bp upstream
Tssr47244	transcription start site region 47244	53 bp upstream
Tssr47245	transcription start site region 47245	73 bp upstream
Tssr47246	transcription start site region 47246	124 bp upstream
Tssr47247	transcription start site region 47247	168 bp upstream
Tssr47248	transcription start site region 47248	231 bp upstream
Tssr47249	transcription start site region 47249	301 bp upstream
Tssr47250	transcription start site region 47250	439 bp upstream
Tssr47251	transcription start site region 47251	503 bp upstream
Tssr47252	transcription start site region 47252	555 bp upstream
Tssr51812	transcription start site region 51812	1164 bp upstream
Tssr51813	transcription start site region 51813	1147 bp upstream
Tssr51814	transcription start site region 51814	173 bp upstream
Tssr51815	transcription start site region 51815	127 bp upstream
Tssr51816	transcription start site region 51816	94 bp upstream