rs33514000 SNP Detail

Summary

• ID
  rs33514000
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132884900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGAGGGA GCACTGAAGA
  GAATCCATTT CGCAATCCCA GTCTGTGAGA GGAGGCCCAT GAAAGCTTAG TGACCCCTTT
  GCCCTTTGCA CTGGCCATTC TCTTCTCCTA GTTTTGTGTG TGTTTGTGGC TTCTTGCTCA
  GCCTGGGTCC AGCACAGCCA TGCTGGGAAA GGCCTGATTC CAACCAACTG TGTTCAGCAG
  K
  CTCTGCTCAT GGCTTCTACT TTGACATCAC CATCACTGAG GCATCACCAT CAATCACCAG
  GTGGCCACTC CTCCCCAGTG GGTACAATCT TTTTTGGTTT TGTCTTGACT CAGGGTCTCG
  CTGTATATAG CCCTGGCTGG CCTGGAGCTC TTTATATAGT TCAGGGTGAC CGGTAACTCA
  CAGAGATCCA CCTGTCTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49494286	NES12855163	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33514000					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49494286	NES12855163	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132884900 () rs orientation: forward

Symbol	Name	Function Class
Rr19288	regulatory region 19288	901 bp proximal
Tssr8757	transcription start site region 8757	888 bp upstream