rs33514002 SNP Detail

Summary

• ID
  rs33514002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132884876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTGGCT GTTTATGTGG
  TACTGGGAGA GGGAGCACTG AAGAGAATCC ATTTCGCAAT CCCAGTCTGT GAGAGGAGGC
  CCATGAAAGC TTAGTGACCC CTTTGCCCTT TGCACTGGCC ATTCTCTTCT CCTAGTTTTG
  TGTGTGTTTG TGGCTTCTTG CTCAGCCTGG GTCCAGCACA GCCATGCTGG GAAAGGCCTG
  R
  TTCCAACCAA CTGTGTTCAG CAGTCTCTGC TCATGGCTTC TACTTTGACA TCACCATCAC
  TGAGGCATCA CCATCAATCA CCAGGTGGCC ACTCCTCCCC AGTGGGTACA ATCTTTTTTG
  GTTTTGTCTT GACTCAGGGT CTCGCTGTAT ATAGCCCTGG CTGGCCTGGA GCTCTTTATA
  TAGTTCAGGG TGACCGGTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49494288	NES12855162	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33514002					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49494288	NES12855162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132884876 () rs orientation: forward

Symbol	Name	Function Class
Rr19288	regulatory region 19288	925 bp proximal
Tssr8757	transcription start site region 8757	912 bp upstream