rs33514880 SNP Detail

Summary

• ID
  rs33514880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132884324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCACACAG CTTCCATGAC
  CTGCTCCTCT CAGTCACAGG TACCATCAGC ATCTATGTGG CCACCAACTC CTTTAACACT
  TGACCTAATC TGTGTAGCAC TGCTTCAGTG ACTGAACTTA TAGCTAGGTC AGCCATGATA
  GGCCGCTTGA ATTGTATGAT CATGATCTGC CCAGTGACCA GGGGTTTAGT CTATCCGTGG
  Y
  CCAAAGTAAA GGAAAACTGG GAAATACTAA AAACAAAGTA TATCAAAATG GTGAACACCA
  TTAATGTGGG TAGGGGAATT TCCATCAGTA AATACCTATT TTAGAGAAGA TACTTTCAAC
  CCAGTCCAAC CTGCCTCTGT CACTGGCCTA CTGTAAGGAT CTGTTTCTGT GTCCTCAACT
  CAACACAGAA CTATACATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49494296	NES12855157	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33514880					SNP	T	T	C	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49494296	NES12855157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132884324 () rs orientation: forward

Symbol	Name	Function Class
Rr19288	regulatory region 19288	1477 bp proximal
Tssr8757	transcription start site region 8757	1464 bp upstream