rs33515646 SNP Detail

Summary

• ID
  rs33515646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132884105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTTCTAA ATAAATGAAT
  CATCAACCCA TACTGGTCAA CTGGAAGATT TGTTTTCTAC CCTGTGGCTA CTCCTGAGGA
  GAAACAACAC TAGAGTTGTT CACTTGAGTG AATATCAACA TGACATAAAG AATTAAGCAA
  GGCCCTCTCC ATCCCCCTCC GTCATTCTCC ATGCAGTCAC AGGTATAGAC GAGAGAAACA
  Y
  GGCAGCGCTG GAGCAGGTGT GCACACAGCT TCCATGACCT GCTCCTCTCA GTCACAGGTA
  CCATCAGCAT CTATGTGGCC ACCAACTCCT TTAACACTTG ACCTAATCTG TGTAGCACTG
  CTTCAGTGAC TGAACTTATA GCTAGGTCAG CCATGATAGG CCGCTTGAAT TGTATGATCA
  TGATCTGCCC AGTGACCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49494302	NES12855154	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33515646					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49494302	NES12855154	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132884105 () rs orientation: forward

Symbol	Name	Function Class
Tssr8757	transcription start site region 8757	1683 bp upstream