rs33516059 SNP Detail

Summary

• ID
  rs33516059
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19240992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAACAA TAATTTGTGA
  TAAAATTACT CAGGTTTAAG TCACTGCACC TTCATCTAGA TTGTCAAAAA GTTCAGGGCC
  ACTCCAGGGC ACTTGAGGGT AAAGCAAGGT GGGAAGGGAG GGAAGTTGTA AAGAAAAAAT
  CAAATCAAAT CAAAACAAAA CAAAAAACAG GTTTTAAGCC ATCTCCAACT GATGGGTGCT
  W
  TCAGATACCC TTCTTCTTAA ACATAGACAA TCACATAGGC CTGTGTGGTG GCAGGCAGCT
  GAGAGTCACC TGTGGGTCAC ACAGCTGGTG ACCAGGGATC CTGAGGCAAC TAATAGCTTA
  GCAGTAAATC CTACAAGTAT CATTGGAATG GTCGCCCTGG TGTGTGGTCC CTACCAGTTC
  ACTTCAGCAG CTTTTGTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss46823437	NES10837009	PERLEGEN	MM_PANEL2	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs33516059					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823437	NES10837009	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19240992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	927 bp proximal
Mtfr1	mitochondrial fission regulator 1	499 bp upstream
Rr397614	regulatory region 397614	1158 bp upstream
Rr573951	regulatory region 573951	11 bp proximal
Rr573952	regulatory region 573952	792 bp proximal
Rr573953	regulatory region 573953	1293 bp proximal
Tssr28500	transcription start site region 28500	474 bp upstream
Tssr28501	transcription start site region 28501	493 bp upstream
Tssr28502	transcription start site region 28502	531 bp upstream
Tssr28503	transcription start site region 28503	538 bp upstream
Tssr28504	transcription start site region 28504	1257 bp upstream
Tssr28505	transcription start site region 28505	1271 bp upstream
Tssr28506	transcription start site region 28506	1284 bp upstream
Tssr28507	transcription start site region 28507	1386 bp upstream
Tssr28508	transcription start site region 28508	1398 bp upstream
Tssr28509	transcription start site region 28509	1460 bp upstream