rs33516062 SNP Detail

Summary

• ID
  rs33516062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19241097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTGGGAA GGGAGGGAAG
  TTGTAAAGAA AAAATCAAAT CAAATCAAAA CAAAACAAAA AACAGGTTTT AAGCCATCTC
  CAACTGATGG GTGCTTTCAG ATACCCTTCT TCTTAAACAT AGACAATCAC ATAGGCCTGT
  GTGGTGGCAG GCAGCTGAGA GTCACCTGTG GGTCACACAG CTGGTGACCA GGGATCCTGA
  R
  GCAACTAATA GCTTAGCAGT AAATCCTACA AGTATCATTG GAATGGTCGC CCTGGTGTGT
  GGTCCCTACC AGTTCACTTC AGCAGCTTTT GTCTTTTCAT CAGCCTTCAG ACCAAGCACC
  CCTCCCTGAA CTGCTCTCTC AGGCTTCTCT CTCCCAGCCT TGGTCACAGC CTGTCAGGCC
  CTTTTGTACT TAAAACGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss46823440	NES10837012	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs33516062					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823440	NES10837012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19241097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	822 bp proximal
Mtfr1	mitochondrial fission regulator 1	394 bp upstream
Rr397614	regulatory region 397614	1053 bp upstream
Tssr28500	transcription start site region 28500	369 bp upstream
Tssr28501	transcription start site region 28501	388 bp upstream
Tssr28502	transcription start site region 28502	426 bp upstream
Tssr28503	transcription start site region 28503	433 bp upstream
Tssr28504	transcription start site region 28504	1152 bp upstream
Tssr28505	transcription start site region 28505	1166 bp upstream
Tssr28506	transcription start site region 28506	1179 bp upstream
Tssr28507	transcription start site region 28507	1281 bp upstream
Tssr28508	transcription start site region 28508	1293 bp upstream
Tssr28509	transcription start site region 28509	1355 bp upstream