rs33516205 SNP Detail

Summary

• ID
  rs33516205
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71062390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGG GCTGGCGACT GCTGGGTGCC
  W
  GGAAGGCCGT CGGTGCGCCT GGGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46285256	mCV22785574	ABI	CRAMUS_MOUSE	f	SNP		T	A					A		T
ss60632752	NES16282205	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	T	A	T		T	T	T	T		A	A	T	T		T
ss145127933	ENSMUSSNP4976465	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							T
ss322700619	CHEV_8_73133639	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33516205					SNP	T	T	A	T	T	A	T	A	T	T	T	T	T	A	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60632752	NES16282205	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71062390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20475	CpG island 20475	973 bp distal
Cpgi20476	CpG island 20476	within coordinates
Cpgi20477	CpG island 20477	1172 bp proximal
Gm45546	predicted gene 45546	685 bp upstream
Gm63790	predicted gene, 63790	653 bp upstream
Rr400904	regulatory region 400904	1104 bp upstream
Rr664832	regulatory region 664832	1437 bp distal
Rr664833	regulatory region 664833	936 bp distal
Rr664834	regulatory region 664834	1288 bp distal
Rr664835	regulatory region 664835	378 bp distal
Rr664836	regulatory region 664836	163 bp proximal
Rr664837	regulatory region 664837	664 bp proximal
Rr664838	regulatory region 664838	1189 bp proximal
Rr664839	regulatory region 664839	1869 bp proximal
Ssbp4	single stranded DNA binding protein 4	1306 bp upstream
Tssr77777	transcription start site region 77777	650 bp upstream
Tssr77778	transcription start site region 77778	959 bp upstream
Tssr81636	transcription start site region 81636	1410 bp upstream