rs33516935 SNP Detail

Summary

• ID
  rs33516935
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19241139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAAACA AAACAAAAAA
  CAGGTTTTAA GCCATCTCCA ACTGATGGGT GCTTTCAGAT ACCCTTCTTC TTAAACATAG
  ACAATCACAT AGGCCTGTGT GGTGGCAGGC AGCTGAGAGT CACCTGTGGG TCACACAGCT
  GGTGACCAGG GATCCTGAGG CAACTAATAG CTTAGCAGTA AATCCTACAA GTATCATTGG
  M
  ATGGTCGCCC TGGTGTGTGG TCCCTACCAG TTCACTTCAG CAGCTTTTGT CTTTTCATCA
  GCCTTCAGAC CAAGCACCCC TCCCTGAACT GCTCTCTCAG GCTTCTCTCT CCCAGCCTTG
  GTCACAGCCT GTCAGGCCCT TTTGTACTTA AAACGTTATA ACACTTGGTC ACATATATTA
  ATTAACCTTG TTTTGATCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss46823443	NES10837016	PERLEGEN	MM_PANEL2	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs33516935					SNP	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823443	NES10837016	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19241139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	780 bp proximal
Mtfr1	mitochondrial fission regulator 1	352 bp upstream
Rr397614	regulatory region 397614	1011 bp upstream
Tssr28500	transcription start site region 28500	327 bp upstream
Tssr28501	transcription start site region 28501	346 bp upstream
Tssr28502	transcription start site region 28502	384 bp upstream
Tssr28503	transcription start site region 28503	391 bp upstream
Tssr28504	transcription start site region 28504	1110 bp upstream
Tssr28505	transcription start site region 28505	1124 bp upstream
Tssr28506	transcription start site region 28506	1137 bp upstream
Tssr28507	transcription start site region 28507	1239 bp upstream
Tssr28508	transcription start site region 28508	1251 bp upstream
Tssr28509	transcription start site region 28509	1313 bp upstream