rs33516938 SNP Detail

Summary

• ID
  rs33516938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19241161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTTAAGC CATCTCCAAC
  TGATGGGTGC TTTCAGATAC CCTTCTTCTT AAACATAGAC AATCACATAG GCCTGTGTGG
  TGGCAGGCAG CTGAGAGTCA CCTGTGGGTC ACACAGCTGG TGACCAGGGA TCCTGAGGCA
  ACTAATAGCT TAGCAGTAAA TCCTACAAGT ATCATTGGAA TGGTCGCCCT GGTGTGTGGT
  Y
  CCTACCAGTT CACTTCAGCA GCTTTTGTCT TTTCATCAGC CTTCAGACCA AGCACCCCTC
  CCTGAACTGC TCTCTCAGGC TTCTCTCTCC CAGCCTTGGT CACAGCCTGT CAGGCCCTTT
  TGTACTTAAA ACGTTATAAC ACTTGGTCAC ATATATTAAT TAACCTTGTT TTGATCTCCC
  TGCCTTTTGG TAGGCTTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss46823446	NES10837018	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs33516938					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823446	NES10837018	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19241161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	758 bp proximal
Mtfr1	mitochondrial fission regulator 1	330 bp upstream
Rr397614	regulatory region 397614	989 bp upstream
Rr573951	regulatory region 573951	within coordinates
Rr573952	regulatory region 573952	623 bp proximal
Rr573953	regulatory region 573953	1124 bp proximal
Tssr28500	transcription start site region 28500	305 bp upstream
Tssr28501	transcription start site region 28501	324 bp upstream
Tssr28502	transcription start site region 28502	362 bp upstream
Tssr28503	transcription start site region 28503	369 bp upstream
Tssr28504	transcription start site region 28504	1088 bp upstream
Tssr28505	transcription start site region 28505	1102 bp upstream
Tssr28506	transcription start site region 28506	1115 bp upstream
Tssr28507	transcription start site region 28507	1217 bp upstream
Tssr28508	transcription start site region 28508	1229 bp upstream
Tssr28509	transcription start site region 28509	1291 bp upstream