rs33516941 SNP Detail

Summary

• ID
  rs33516941
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19241478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGTACT TAAAACGTTA
  TAACACTTGG TCACATATAT TAATTAACCT TGTTTTGATC TCCCTGCCTT TTGGTAGGCT
  TACTCAGGGT GTGGTTCAAG GCTTAAAAAA CAAACAAACA AACAAACAAA CCCCACCAAC
  TTTGTACTGT CATAATGGGC TCCCAACGAG CCGTTGCTGA GTAACTGAAT TGAAGCTCTA
  S
  GTGAAATCCA AAGCAGTAGC CAGGAGGAAT TTAGGCCATC CAGGGTAAGA ACACCAGCGC
  TCCAATGAGA GGGTAAGAGA GAAGGCGAAG TAGCAACAGC TGCTGCCCAC TTCCCACCTC
  AACTCTTCCA CCCTCTTCCA GGTTGTTTTG GACATAGGCT GGTCTTCAAC TCTGGATCCT
  CCAGCCTCCA ACTTCAAACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss46823449	NES10837020	PERLEGEN	MM_PANEL2	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs33516941					SNP	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823449	NES10837020	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19241478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	441 bp proximal
Mtfr1	mitochondrial fission regulator 1	13 bp upstream
Rr397614	regulatory region 397614	672 bp upstream
Tssr28500	transcription start site region 28500	within coordinates
Tssr28501	transcription start site region 28501	7 bp upstream
Tssr28502	transcription start site region 28502	45 bp upstream
Tssr28503	transcription start site region 28503	52 bp upstream
Tssr28504	transcription start site region 28504	771 bp upstream
Tssr28505	transcription start site region 28505	785 bp upstream
Tssr28506	transcription start site region 28506	798 bp upstream
Tssr28507	transcription start site region 28507	900 bp upstream
Tssr28508	transcription start site region 28508	912 bp upstream
Tssr28509	transcription start site region 28509	974 bp upstream