rs33517714 SNP Detail

Summary

• ID
  rs33517714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19242045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTAGAA TAACCCTTCA
  TTAAAAACTA CGCACACCAA TTAGGCAGAC TTTGAGGCGG GGGAACTGAA GGCAGGAAAA
  GTCTTCACTC CCTCTGAGCC GCGCCTTCCA CTCCTCCAGA ACATACGTCC GGGATTTGAG
  GCCCGAAACA GATCGCCCTG GCAGACAAAG TCCCCACAGA GCGTGGGTTG AGAAGGGCTC
  R
  ACACAGGCTA GGCTAGGCTA GGCTAAGGAC CTAGCTCCTT TCAGCGGGCA CACATTTGAG
  ACTTCACTCG GAATGTGGGT ATTCCTACAC CCAAAAGGGG CGAAGTTTAC CAACAAAAAT
  AACAGGGGCA GAAGCACCCA AGACAAAGCG CGGCACACTA GCAAGCACAC GCCCCTTACT
  GGGCACCGCG CGTGCGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss46823452	NES10836936	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs33517714					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823452	NES10836936	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19242045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	within coordinates
Gm65217	predicted gene, 65217	1594 bp downstream
Mtfr1	mitochondrial fission regulator 1	within coordinates
Rr397614	regulatory region 397614	105 bp upstream
Tssr28500	transcription start site region 28500	565 bp downstream
Tssr28501	transcription start site region 28501	530 bp downstream
Tssr28502	transcription start site region 28502	519 bp downstream
Tssr28503	transcription start site region 28503	508 bp downstream
Tssr28504	transcription start site region 28504	204 bp upstream
Tssr28505	transcription start site region 28505	218 bp upstream
Tssr28506	transcription start site region 28506	231 bp upstream
Tssr28507	transcription start site region 28507	333 bp upstream
Tssr28508	transcription start site region 28508	345 bp upstream
Tssr28509	transcription start site region 28509	407 bp upstream