rs33517717 SNP Detail

Summary

• ID
  rs33517717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19242207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAAGTC CCCACAGAGC
  GTGGGTTGAG AAGGGCTCGA CACAGGCTAG GCTAGGCTAG GCTAAGGACC TAGCTCCTTT
  CAGCGGGCAC ACATTTGAGA CTTCACTCGG AATGTGGGTA TTCCTACACC CAAAAGGGGC
  GAAGTTTACC AACAAAAATA ACAGGGGCAG AAGCACCCAA GACAAAGCGC GGCACACTAG
  M
  AAGCACACGC CCCTTACTGG GCACCGCGCG TGCGCACAGA GCCCGGGACA GGTAGCCGGC
  GTGGCCGGCG AGCAGACACG CCTTCCGCCG GCCTCTCCTG AGCCCGCCCC CGGGCCTCAG
  CGAGCCGTTC ACTGGTCAGC CTAGGCCGGG CCAGGGGCGG GGATTGGCTG ATTGGCATAA
  GGTCCTGGGA CAGCCAATCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss46823455	NES10836938	PERLEGEN	MM_PANEL2	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs33517717					SNP	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823455	NES10836938	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19242207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	within coordinates
Gm65217	predicted gene, 65217	1432 bp downstream
Mtfr1	mitochondrial fission regulator 1	within coordinates
Rr397614	regulatory region 397614	within coordinates
Rr573951	regulatory region 573951	686 bp distal
Rr573952	regulatory region 573952	within coordinates
Rr573953	regulatory region 573953	78 bp proximal
Rr573954	regulatory region 573954	1204 bp proximal
Rr573955	regulatory region 573955	1721 bp proximal
Tssr28500	transcription start site region 28500	727 bp downstream
Tssr28501	transcription start site region 28501	692 bp downstream
Tssr28502	transcription start site region 28502	681 bp downstream
Tssr28503	transcription start site region 28503	670 bp downstream
Tssr28504	transcription start site region 28504	42 bp upstream
Tssr28505	transcription start site region 28505	56 bp upstream
Tssr28506	transcription start site region 28506	69 bp upstream
Tssr28507	transcription start site region 28507	171 bp upstream
Tssr28508	transcription start site region 28508	183 bp upstream
Tssr28509	transcription start site region 28509	245 bp upstream