rs33517720 SNP Detail

Summary

• ID
  rs33517720
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19242798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCCGGA GCAGAGAGCA
  GCCCTCCGGC TCGCCCGCGC CTGGCCTGCT GAGCTCCGCG GGCCGCCGGC CTGGCTCCCA
  TCCCCCGCAG TCGGCGTTGT GCCCTCGCTG GATCCGGGCT GAACGGGGCG GCCCACGGCG
  TTCAGCCTGT TCTACCTGGA CCTACTTTCC TGTCATTGTC GGCTGGCAGC TCTGAACTTT
  S
  TAAGCGTGCG CAGTTTGCGT GTAGCCAGAC TACAGAAACT TTGAGATCTG AAGTCAAACT
  TAACCAAACC TTTCTTTCCG CCTGATGGTT TGTTTTGTGA TTGGTCTGAT GTAACCTCTT
  CTGGCTTAAA CCTCGTTTTG TGCTTGAGGA TGGTCAATAG AAGTTCGGAT CCTACCCCCT
  CCACCTCCCA ACTACAGGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss46823458	NES10836940	PERLEGEN	MM_PANEL2	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs33517720					SNP	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823458	NES10836940	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19242798 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	within coordinates
Gm65217	predicted gene, 65217	841 bp downstream
Mtfr1	mitochondrial fission regulator 1	within coordinates
Rr397614	regulatory region 397614	347 bp downstream
Tssr28500	transcription start site region 28500	1318 bp downstream
Tssr28501	transcription start site region 28501	1283 bp downstream
Tssr28502	transcription start site region 28502	1272 bp downstream
Tssr28503	transcription start site region 28503	1261 bp downstream
Tssr28504	transcription start site region 28504	536 bp downstream
Tssr28505	transcription start site region 28505	526 bp downstream
Tssr28506	transcription start site region 28506	512 bp downstream
Tssr28507	transcription start site region 28507	409 bp downstream
Tssr28508	transcription start site region 28508	361 bp downstream
Tssr28509	transcription start site region 28509	341 bp downstream