rs33517723 SNP Detail

Summary

• ID
  rs33517723
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19243211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCG ATTCCAGTCA CCTTTTCCTA
  K
  TGTATGTAGT TGTTTTACAT TACAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46823461	NES10836891	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G		G	G	T
ss320678127	CHEV_3_19089047	CHEVERUD	SCREENING_POP	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs33517723					SNP	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823461	NES10836891	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19243211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	355 bp distal
Gm65217	predicted gene, 65217	428 bp downstream
Mtfr1	mitochondrial fission regulator 1	within coordinates
Rr397614	regulatory region 397614	760 bp downstream
Tssr28500	transcription start site region 28500	1731 bp downstream
Tssr28501	transcription start site region 28501	1696 bp downstream
Tssr28502	transcription start site region 28502	1685 bp downstream
Tssr28503	transcription start site region 28503	1674 bp downstream
Tssr28504	transcription start site region 28504	949 bp downstream
Tssr28505	transcription start site region 28505	939 bp downstream
Tssr28506	transcription start site region 28506	925 bp downstream
Tssr28507	transcription start site region 28507	822 bp downstream
Tssr28508	transcription start site region 28508	774 bp downstream
Tssr28509	transcription start site region 28509	754 bp downstream