rs33518616 SNP Detail

Summary

• ID
  rs33518616
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19243221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAAAAGAA TATTAAGGAG
  TATTTCATGA TACTTGGTAA TTTAGCGTTC ACTTTTTTGT TTGGTTTGGT TTTGAGACAG
  AGTTGTCTTC CTTACTCTAG GCTGGGGTGG AATGCACTAT GTAGATTAGG TTGAGCTGCC
  TAAAACCTCC TGCCTCAGTC ACCACGCCCG ATTCCAGTCA CCTTTTCCTA GTGTATGTAG
  Y
  TGTTTTACAT TACAATGACT TAGTCAAGGA AGTTGTGACA CTTACTATCT TGTTACATGA
  AAGTAAGTTG TGTCCACATA TATTGATCAC ATATATTGTA CATACACAAA AATCATTTAA
  AAGGTAAAAA TTATTTTTAA AAAGAAGGTA ATAGAAATGG GTTTGCGATT ATATACAACC
  GAGTTTGACT ATAAAATGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46823464	NES10836893	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33518616					SNP	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46823464	NES10836893	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19243221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	365 bp distal
Gm65217	predicted gene, 65217	418 bp downstream
Mtfr1	mitochondrial fission regulator 1	within coordinates
Rr397614	regulatory region 397614	770 bp downstream
Tssr28500	transcription start site region 28500	1741 bp downstream
Tssr28501	transcription start site region 28501	1706 bp downstream
Tssr28502	transcription start site region 28502	1695 bp downstream
Tssr28503	transcription start site region 28503	1684 bp downstream
Tssr28504	transcription start site region 28504	959 bp downstream
Tssr28505	transcription start site region 28505	949 bp downstream
Tssr28506	transcription start site region 28506	935 bp downstream
Tssr28507	transcription start site region 28507	832 bp downstream
Tssr28508	transcription start site region 28508	784 bp downstream
Tssr28509	transcription start site region 28509	764 bp downstream