rs33519684 SNP Detail

Summary

• ID
  rs33519684
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAT TTACATTATG ATTGTTAACA
  K
  TAGCAAACAT TACAGTTATG AAGTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45788560	mCV25083313	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss148831422	ENSMUSSNP4938413	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss321612243	CHEV_5_92753323	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33519684					SNP	G	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472156 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614603	regulatory region 614603	660 bp distal
Tssr47287	transcription start site region 47287	1306 bp downstream
Tssr47288	transcription start site region 47288	518 bp downstream
Tssr47289	transcription start site region 47289	508 bp downstream
Tssr47290	transcription start site region 47290	493 bp downstream
Tssr47291	transcription start site region 47291	451 bp downstream
Tssr47292	transcription start site region 47292	820 bp upstream
Tssr51864	transcription start site region 51864	1555 bp upstream
Tssr51865	transcription start site region 51865	1471 bp upstream
Tssr51866	transcription start site region 51866	1191 bp upstream
Tssr51867	transcription start site region 51867	589 bp upstream
Tssr51868	transcription start site region 51868	543 bp upstream
Tssr51869	transcription start site region 51869	501 bp upstream
Tssr51870	transcription start site region 51870	451 bp upstream
Tssr51871	transcription start site region 51871	416 bp upstream
Tssr51872	transcription start site region 51872	815 bp downstream