rs33520074 SNP Detail

Summary

• ID
  rs33520074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90019286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGAATT TTGGGTGTTC
  TTTTCTTTTT TGTTAAGTGG CAAATTTTCT AGATTTGGAT AGCTAATGAG ATTTTTTTTT
  TAAGGTAGCT CTGGTTAGAC CCAAATGGAT CTCCACAGGC AGTAGGACAA AGGCATTTTC
  TGACCACTAA ATAAAAATAG GGGAACTGAT AAAATCACTG AATGTGGAGA ACAGGGTTCT
  Y
  GGCAGCCAGT GTTCTGTAAG AGTCAAGTCT GACAGTGCAG TAGCCATCTC TTCCCCAGGC
  CTGGCATTCA GTAGCCCCTG TTTGTTCCAC CTGGTGCTTT CTAAATGCTG TTCAGTCCAG
  GTGCCTGCAC ACATGGCATC TGGCAGCAAG TGTTAGGAGA AGTGTGACAG GGAGAGAGAG
  GCCTAGAGCT GAGCGTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss48323005	NES12186601	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33520074					SNP	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48323005	NES12186601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90019286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8420	CpG island 8420	795 bp distal
Rr519072	regulatory region 519072	1634 bp distal
Rr519073	regulatory region 519073	338 bp distal
Rr519074	regulatory region 519074	1604 bp distal
Sod1	superoxide dismutase 1, soluble	Intron
Tssr139277	transcription start site region 139277	1861 bp downstream
Tssr139278	transcription start site region 139278	1809 bp downstream
Tssr139279	transcription start site region 139279	1788 bp downstream
Tssr139280	transcription start site region 139280	1766 bp downstream
Tssr139281	transcription start site region 139281	1757 bp downstream
Tssr139282	transcription start site region 139282	1673 bp downstream
Tssr139283	transcription start site region 139283	1627 bp downstream