rs33520477 SNP Detail

Summary

• ID
  rs33520477
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89941929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAACTGTT TCAAAAAGAA AAGAAAGTTA ACACCTTTTC
  CTTCTGCACC CTCCTTCACC TCCCAAATCC ATACTGCCTC TCACCTGAAT TTCATTAAAG
  S
  CATCCACCTT ACTAAAAGAT TGTTCCAAAC AGGAAGATCT CAGTCTCTCA GCTCTGTTGT
  CTTCTCTTCC CCCAGTGTGT ATAGTCCCTC AGAGATGGAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
ss48323283	NES12190781	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	WSB/EiJ
rs33520477					SNP	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48323283	NES12190781	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89941929 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8419	CpG island 8419	260 bp distal
Gm10789	predicted gene 10789	within coordinates
Gm56608	predicted gene, 56608	within coordinates
Rr404948	regulatory region 404948	983 bp downstream
Rr519038	regulatory region 519038	1283 bp distal
Rr519040	regulatory region 519040	1074 bp distal
Rr519041	regulatory region 519041	within coordinates
Tiam1	T cell lymphoma invasion and metastasis 1	1272 bp upstream
Tssr139275	transcription start site region 139275	1045 bp downstream
Tssr142016	transcription start site region 142016	1266 bp upstream
Tssr142017	transcription start site region 142017	1247 bp upstream
Tssr142018	transcription start site region 142018	1218 bp upstream
Tssr142019	transcription start site region 142019	1184 bp upstream