rs33520478 SNP Detail

Summary

• ID
  rs33520478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89941516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTAGGAGCC AGATAATATC CGCCACCAAA CAGACTTTAG
  GTAGGCAGAG TGGCCTTAGC CAAGTATTGG ATAGTCCGGG ACTCATTGGG CTAATGTCCA
  R
  CAAGTGAACT TGAGTTTCAC GGTCGCCAGG GCATTGTTCG TGACTGACGA GGTTCGCACA
  TGCCTCGGCT CTCTGTAAAA TCCTCGTAGT TGGTGCAGGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48323284	NES12190780	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33520478					SNP	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48323284	NES12190780	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89941516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8419	CpG island 8419	within coordinates
Gm10789	predicted gene 10789	within coordinates
Gm56608	predicted gene, 56608	within coordinates
Rr404948	regulatory region 404948	570 bp downstream
Rr519038	regulatory region 519038	870 bp distal
Rr519040	regulatory region 519040	661 bp distal
Rr519041	regulatory region 519041	within coordinates
Tiam1	T cell lymphoma invasion and metastasis 1	859 bp upstream
Tssr139275	transcription start site region 139275	632 bp downstream
Tssr142016	transcription start site region 142016	853 bp upstream
Tssr142017	transcription start site region 142017	834 bp upstream
Tssr142018	transcription start site region 142018	805 bp upstream
Tssr142019	transcription start site region 142019	771 bp upstream