rs33520803 SNP Detail

Summary

• ID
  rs33520803
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34420610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCGCCCCT GTTCAGACTC GCACAGCCGG CACCAGACTG
  TTCTGGAATC GGGTCTGTTT ACATCACTCT ACGGGGAGCC CCTTCCTGGA ATACAGGACT
  R
  CGTCCTGTTT ATCTCTGCCA TAACTTAAGT AGGCTACCTG GAGCGTAGTC CCGGAGCGTA
  GTAGGCCCTC CATATGTACT TGTTGACTAA ATATCCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46286032	mCV25375639	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss149088258	ENSMUSSNP2957592	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss322573975	CHEV_8_35041054	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33520803					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34420610 () rs orientation: forward

Symbol	Name	Function Class
9530006C21Rik	RIKEN cDNA 9530006C21 gene	1813 bp upstream
Cpgi20240	CpG island 20240	within coordinates
Gm64370	predicted gene, 64370	759 bp upstream
Rbpms	RNA binding protein gene with multiple splicing	719 bp upstream
Rr661902	regulatory region 661902	788 bp distal
Rr661903	regulatory region 661903	229 bp distal
Rr661904	regulatory region 661904	269 bp proximal
Rr661905	regulatory region 661905	1168 bp proximal
Rr661906	regulatory region 661906	1246 bp proximal
Rr661907	regulatory region 661907	1573 bp proximal
Tssr80881	transcription start site region 80881	766 bp upstream
Tssr80882	transcription start site region 80882	605 bp upstream
Tssr80883	transcription start site region 80883	573 bp upstream