rs33520844 SNP Detail

Summary

• ID
  rs33520844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:134679999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC TCAGTTTGGA TATGATACCT
  Y
  GTTGCCTCCC TCATACAGCT GGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45288343	mCV27542888	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss147637391	ENSMUSSNP2991528	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T	T
ss320514838	CHEV_2_134663815	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33520844					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134679999 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Plcb1	phospholipase C, beta 1			Intron
				mRNA-UTR
Rr565690	regulatory region 565690			1844 bp distal
Rr565691	regulatory region 565691			1679 bp distal
Rr565692	regulatory region 565692			185 bp proximal