rs33521198 SNP Detail

Summary

• ID
  rs33521198
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90185070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAACA AACAAAAAAA
  ACCCAGCATT CAGTATGAAC TCACATTAGC TCTTCAAAGG AGAAACTCTT TAGACCCGTC
  CTAGTTGTTC TCAGTGGAGT AAGGGAATAT TTATTTACTT TTTGGTGCGC AGTGGGCTGT
  CTGCCGGACA CACATCAGTG ATGCAGACTG ATTTCAGGGA GCTCATTTCT GTTCTGGCAG
  K
  GAGAGGCGAA GGACTTTGCT CTCAAAATCT AGAGGATTTA GTCTGGCTAT GCACATCACC
  TCTCTAAAGA GATCAGAACT TCTTAGAGCT TTTTGCCATG TTGGGCTGGA CCTCAGCTCC
  TCACTAGGGC AGTTTTGCCC CATGGGATAA TACTTTTGTC CTTGGCTGCA CTGCCTGGGG
  TATTCAGGGT TCAGCCCTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48322550	NES12210630	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33521198					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48322550	NES12210630	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90185070 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hunk	hormonally upregulated Neu-associated kinase			Intron
				Noncoding-Transcript-Variant
Rr519121	regulatory region 519121			1667 bp distal
Rr519122	regulatory region 519122			1210 bp distal
Tssr139291	transcription start site region 139291			1728 bp downstream