rs33521199 SNP Detail

Summary

• ID
  rs33521199
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90185015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA AAAAAAAAAC
  ACCCACAAAA AACAAAAAAA CAAAAACAAA AACAAAAAAC AAACAAACAA AAAAAACCCA
  GCATTCAGTA TGAACTCACA TTAGCTCTTC AAAGGAGAAA CTCTTTAGAC CCGTCCTAGT
  TGTTCTCAGT GGAGTAAGGG AATATTTATT TACTTTTTGG TGCGCAGTGG GCTGTCTGCC
  S
  GACACACATC AGTGATGCAG ACTGATTTCA GGGAGCTCAT TTCTGTTCTG GCAGGGAGAG
  GCGAAGGACT TTGCTCTCAA AATCTAGAGG ATTTAGTCTG GCTATGCACA TCACCTCTCT
  AAAGAGATCA GAACTTCTTA GAGCTTTTTG CCATGTTGGG CTGGACCTCA GCTCCTCACT
  AGGGCAGTTT TGCCCCATGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48322551	NES12210628	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33521199					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48322551	NES12210628	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90185015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8424	CpG island 8424	930 bp distal
Hunk	hormonally upregulated Neu-associated kinase	within coordinates
Rr519121	regulatory region 519121	1612 bp distal
Rr519122	regulatory region 519122	1155 bp distal
Tssr139291	transcription start site region 139291	1673 bp downstream