rs33521250 SNP Detail

Summary

• ID
  rs33521250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164586945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGG ACTGTGGCAT GCCTGTGAAC
  Y
  GGCATTGTGG AGGTGGAGGC AGATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45288647	mCV23594284	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss148231822	ENSMUSSNP1137609	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T
ss320606894	CHEV_2_164570525	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33521250					SNP	T	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164586945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	552 bp proximal
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	990 bp upstream
Tssr21635	transcription start site region 21635	954 bp upstream
Tssr21636	transcription start site region 21636	1003 bp upstream
Tssr27522	transcription start site region 27522	1917 bp upstream
Tssr27523	transcription start site region 27523	1901 bp upstream
Tssr27524	transcription start site region 27524	1878 bp upstream
Tssr27525	transcription start site region 27525	1844 bp upstream
Tssr27526	transcription start site region 27526	1814 bp upstream
Tssr27527	transcription start site region 27527	871 bp downstream
Tssr27528	transcription start site region 27528	891 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates