rs33521864 SNP Detail

Summary

• ID
  rs33521864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47017669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGAACC TGACGCCCTG
  CCCTCCTCTG GCCTCCCTGG GCACCTGCAT AGGTGGCATA CACACGCACA GACACACACA
  TGCACGTGAA TGACTTTAAA AACCGGAATG AAGAAAAGCG GATGAGCTCC GGAGACGTGT
  ACAGTCAACG GGATTCGGTG AGTCACTGGA TTCGGGGAGA CAGTATCAGG GAAAGGATGC
  R
  TTGAGGGTGA CTCCTAAGTG ATGAAAGATG GTTAGAGGGA ACTGGTGTCA CAATGGCCAG
  AGGCAGGTAG AGTCTGCTAA ACACTGAATA GAACACTTTG ATTTTGCAAC TAGGAGGTGT
  CGGGTGATCT CTGCCAGGGA AGCTTAAGCC AAGTAGGAGC TTGGAGTGCC TTCAAGAGTG
  AGCACAGGGT AAGGCCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39546241	mCV22794279	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss145701143	ENSMUSSNP2188330	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33521864					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47017669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9240	CpG island 9240	1372 bp distal
Gm65134	predicted gene, 65134	677 bp downstream
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	1717 bp upstream
Rr331602	regulatory region 331602	69 bp distal
Rr339921	regulatory region 339921	668 bp distal
Rr370260	regulatory region 370260	1497 bp downstream
Tssr148375	transcription start site region 148375	1743 bp upstream
Tssr148376	transcription start site region 148376	1730 bp upstream