rs33522501 SNP Detail

Summary

• ID
  rs33522501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24717155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACTCAAGA CCTCTGGAAG AGCAGTCAGT GCTCTTAACC
  ACCGAGCCAT CTCTCCAGCA GCTGCCCCCC CCCCCCAAAC ATCTTATAAT GGGAAATAAT
  R
  ATTCTTATGG AGGAAATCTT CTACCAAATG AAAGAAGGCT TTCAAGTGCG AGTAACCTAA
  CTGCTAGGGC GGTGGCCAAG AAGGCAGAAA GGTCCTGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45788751	mCV25349789	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss148095184	ENSMUSSNP2211465	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33522501					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24717155 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608341	regulatory region 608341	1227 bp distal
Rr608342	regulatory region 608342	1319 bp distal
Rr608343	regulatory region 608343	1139 bp distal
Rr608344	regulatory region 608344	25 bp proximal