rs33523003 SNP Detail

Summary

• ID
  rs33523003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66080205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG GCCTGGGAAA AGAGAGGTGC
  R
  CTCTGTAGAG GAAGCCCCCT TTCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss39546731	mCV24592650	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss145840861	ENSMUSSNP4471760	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss325428010	CHEV_17_66122550	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs33523003					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66080205 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	234 bp distal
Rab31	RAB31, member RAS oncogene family	458 bp upstream
Rr529807	regulatory region 529807	581 bp distal
Rr529808	regulatory region 529808	657 bp distal
Rr529809	regulatory region 529809	within coordinates
Rr529810	regulatory region 529810	367 bp proximal
Rr529811	regulatory region 529811	472 bp proximal
Rr529812	regulatory region 529812	677 bp proximal
Tssr149074	transcription start site region 149074	560 bp upstream
Tssr149075	transcription start site region 149075	534 bp upstream
Tssr149076	transcription start site region 149076	515 bp upstream