rs33523296 SNP Detail

Summary

• ID
  rs33523296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103476491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGGAAA GGGGAGCGGT
  CTCCACCCTC TCCACTCCAT TCACAAAGAA CAGAGGCACC AAGAGGCTTA GTATCTTGCC
  CATGGTTGCA CCAATGTATC ATTCGTTGTC TGCGAAGCTC CAGGGCCTAG AGCAGCTGAA
  GAAGCATAGA AGCATGCGAG GTGGGGTCGA CAGGGCAGGG AGGAGAAGAC AGGGATAGCT
  Y
  CTCTGAGACC ACAGCTCAGG AAGCCTGTGG AGAATGCCAG GGTATATGGA GCAGCAGCTG
  AAAGGAGGGA CAGAGGGAAG GAGGCCAAGT CTAAAGGGGC TCGGTATGCC CTACTGGAGA
  GAGCCAGGGT TATCACAAAG GACCAAGGAA GTTCGAGGAA CTTTGAGAGA GGTTGACTTA
  ACCTTGTGAT ATCTTGTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46824338	NES10726791	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33523296					SNP	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46824338	NES10726791	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103476491 () rs orientation: forward

Symbol	Name	Function Class
Rr69865	regulatory region 69865	691 bp distal