rs33523498 SNP Detail

Summary

• ID
  rs33523498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31276354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG AAGGCATGCA TAACAAAGGC
  R
  GAACAAAGGA GCCACCTGCC TTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39546266	mCV24388990	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
ss145455227	ENSMUSSNP4410727	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33523498					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31276354 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	314 bp upstream
Cpgi8940	CpG island 8940	within coordinates
Rr525355	regulatory region 525355	within coordinates
Rr525356	regulatory region 525356	358 bp proximal
Rr525357	regulatory region 525357	683 bp proximal
Rr525358	regulatory region 525358	883 bp proximal
Tssr143637	transcription start site region 143637	306 bp upstream
Tssr143638	transcription start site region 143638	324 bp upstream
Tssr143639	transcription start site region 143639	339 bp upstream
Tssr143640	transcription start site region 143640	360 bp upstream
Tssr143641	transcription start site region 143641	388 bp upstream