rs33525500 SNP Detail

Summary

• ID
  rs33525500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132355419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACAACT ACATGTTTCG
  ATGTAGCAAA GTCCCTGATA AGGGCTGGAG GGCCACACCC CTTAAAAGAT GCACAAAATT
  GCCTGCACCA AGGCAAAACA AACAAACAAA CAAAACAAAA CAAACAAAAA CTATAGGCAA
  CATATGAAGA AGGGAAAGGA TGGAGAATGG GAATTCGCCA GATAGGATTG CTGGGGATGG
  Y
  AGGGGCGGAA AAAGACTGGA AGAAATAGCC GTGGGGTCTG TATGAGGAGG TGTGTACAGC
  TGGGCTGGGC ACTGTCACAG CGCTGTCATA GTGCCCAGCC TAGCCCAGCT GTCCCTTGCA
  TCATTTGCAC AATTTATGTG TTCTTTCAGG TACAGAAAAC AATGTTTGAT ACCTCGATTT
  TAGGTATCAT GAGAGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45289149	mCV22302771	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33525500					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132355419 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Gm74612	predicted gene, 74612	995 bp upstream
Rr367319	regulatory region 367319	614 bp downstream
Rr367320	regulatory region 367320	505 bp upstream
Rr565480	regulatory region 565480	1006 bp distal
Rr565481	regulatory region 565481	508 bp distal
Rr565482	regulatory region 565482	within coordinates
Tssr26474	transcription start site region 26474	990 bp upstream
Tssr26475	transcription start site region 26475	403 bp downstream