rs33525954 SNP Detail

Summary

• ID
  rs33525954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121267958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG TCAGGTGACA GCTTTGAGGA
  R
  TCAGTTTTCT CCTACTATTT GGGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45289431	mCV22586266	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss147386109	ENSMUSSNP3025386	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss320483159	CHEV_2_121263213	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33525954					SNP	A	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121267958 () rs orientation: forward

Symbol	Name	Function Class
Ell3	elongation factor RNA polymerase II-like 3	1550 bp downstream
Pdia3	protein disulfide isomerase associated 3	within coordinates
Tssr19767	transcription start site region 19767	1555 bp downstream
Tssr19768	transcription start site region 19768	1113 bp downstream
Tssr19769	transcription start site region 19769	130 bp upstream
Tssr19770	transcription start site region 19770	428 bp upstream