rs33526466 SNP Detail

Summary

• ID
  rs33526466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119067482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC TCCTTCCCAA ACGCCCCCAG
  Y
  CAAGGGTAGG GAATGCCGGC TCTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45289156	mCV24413906	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147326841	ENSMUSSNP6986377	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33526466					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119067482 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	within coordinates
Cpgi12109	CpG island 12109	within coordinates
Rr563445	regulatory region 563445	within coordinates
Rr563446	regulatory region 563446	54 bp proximal
Rr563447	regulatory region 563447	264 bp proximal
Rr563448	regulatory region 563448	378 bp proximal
Rr563449	regulatory region 563449	620 bp proximal
Rr563450	regulatory region 563450	1076 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	359 bp upstream
Tssr19609	transcription start site region 19609	204 bp upstream
Tssr19610	transcription start site region 19610	350 bp upstream
Tssr19611	transcription start site region 19611	389 bp upstream
Tssr19612	transcription start site region 19612	452 bp upstream
Tssr19613	transcription start site region 19613	481 bp upstream
Tssr19614	transcription start site region 19614	510 bp upstream
Tssr19615	transcription start site region 19615	530 bp upstream
Tssr19616	transcription start site region 19616	633 bp upstream
Tssr19617	transcription start site region 19617	645 bp upstream
Tssr19618	transcription start site region 19618	677 bp upstream
Tssr19619	transcription start site region 19619	724 bp upstream