rs33526917 SNP Detail

Summary

• ID
  rs33526917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114159020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACATTTTGT TTCATAAGTT TCCTTGGACA TAGTGTTGTA
  CAACAATAAC AGGAAATTAA TTAGGACAGA TTTTTTTCTG TGAATTCACA TTTCAGCAAT
  Y
  ATTAATGATT ATATTATCTG AGTTAGGCAG GGTATACAAC ATATGACATA TTTGTCTTCC
  AGACCACATA TATTCTTCTT TTATGAATTT ATTAATTTGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47309427	NES11396345	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs33526917					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47309427	NES11396345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114159020 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv3-3	immunoglobulin heavy variable V3-3	1039 bp downstream
Tssr118065	transcription start site region 118065	1524 bp downstream